Thematic Articles

Microbial Transformations of Arsenic in the Environment: From Soda Lakes to Aquifers

Arsenic is a highly toxic element that supports a surprising range of biogeochemical transformations. The biochemical basis of these microbial interactions is described, with an emphasis on energy- yielding redox biotransformations that cycle between the As5+ and As3+ oxidation states. The subsequent impact of As3+-oxidising and As5+-reducing prokaryotes on the chemistry of selected environments is also described, focusing on soda lakes with naturally high concentrations of the metalloid and on Southeast Asian aquifer sediments, where the microbial reduction of sorbed As5+ and subsequent mobilisation of As3+ into water abstracted for drinking and irrigation threaten the lives of millions.

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Chemistry and Mineralogy of Arsenic

Arsenic has diverse chemical behavior in the natural environment. It has the ability to readily change oxidation state and bonding configura- tion, which creates rich inorganic and organic chemistry. This behav- ior is a consequence of the electronic configuration of its valence orbitals, with partially filled states capable of both electron donation and overlap in covalent bonds. In natural compounds, arsenic bonds primarily to oxygen and sulfur, generating a variety of aqueous species and minerals. The affinity of arsenic for these two elements, along with its stable bonding to methyl groups, constitutes the structural basis for most organic and biosynthetic compounds. The agile chemistry of arsenic helps to explain its contradictory action as both a toxin and a curative, and its sometimes-elusive behavior in the environment.

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Arsenic

Arsenic is an element known throughout history as a classic poison. Currently, very small but highly significant concentrations of this element in drinking water supplies are causing massive health problems to many millions of people in some of the world’s poorest nations. More localised sources related to mining and processing are also a concern. A review of background information on arsenic chemistry, occurrence in the Earth, production and uses, as well as its toxic properties, leads in to the other articles in this issue of Elements.

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New Opportunities at Emerging Facilities

Synchrotron X-ray sources and pulsed neutron sources are getting brighter. This permits new opportunities for scattering, spectroscopy, and imaging studies of Earth materials and processes that were not possible a decade ago. The impact of these latest-generation facilities on Earth sciences research requiring nanometer- to micrometer-scale resolution is growing and will continue to grow as next-generation X-ray and neutron sources become available over the next six years. These facilities will include the world’s first X-ray free-electron lasers in the US (2009) and Europe (2012) and the Spallation Neutron Source at Oak Ridge National Laboratory, USA (2006). In addition, five nanoscale science research centers are under con- struction in the US and will impact the emerging field of nanogeoscience.

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Accessing User Facilities and Making Your Research Experience Successful

Access to many of the world’s leading user facilities is easier than ever before, with web-based tutorials providing everything from instru- mental overviews and example applications to online safety training. Submission of proposals for experiment time at large, heavily subscribed facilities, including synchrotron and neutron sources, has been streamlined with web-based submission. Support, which is commonly the key to successful experiments, is provided by facility staff and experienced users, allowing new users to begin experiments with minimal experience. Increasingly Earth scientists are taking advantage of the wide range of unique instrumentation at user facilities. Here, we explain how you can, too.

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Scientific Advances Made Possible by User Facilities

National scientific user facilities are becoming increasingly available to many different scientific communities in a number of countries. There is a growing use of these facilities by Earth and environmental scien- tists to study a broad range of materials and processes under realistic P–T and environmental conditions at unprecedented levels of energy and spatial resolution and elemental and isotopic sensitivity. The results of these studies are providing new insights into biogeochemical processes operating at Earth’s surface as well as petrological, geochemical, and geophysical processes in Earth’s interior. The availability of national user facilities is changing scien- tific approaches and is leading to multidisciplinary studies that were not possible a decade ago.

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Synchrotron Radiation, Neutron, and Mass Spectrometry Techniques at User Facilities

User research facilities around the world offer tremendous opportunities for scientific experimentation by members of the Earth science com- munity. Synchrotron radiation sources, neutron sources, mass spec- trometers, and others represent a powerful force in tackling complex scien- tific problems. In these techniques, Earth materials are bombarded with beams of ions, subatomic particles and/or photons to learn the secrets of their properties and histories. Some of these methods can be applied to nanoscale materials with “desktop” instruments while others require macro- scopic samples and utilize large-scale devices residing in multiple buildings; and there is everything in between.

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User Facilities around the World

National and international communities of scientists from a variety of disciplines have been successful in convincing a growing number of countries to construct major user facilities that collectively serve these communities. These user facilities make possible experimental studies that cannot be done in individual investigator laboratories. In addition, they have created a new style of research, in which scientists working in shared facilities conduct studies that benefit from a merging of ideas and techniques from different disciplines. Earth science users of these facilities are growing in number and are benefiting greatly from the multidisciplinary interactions such facilities stimulate and from the unique experimental capabilities they provide.

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User Research Facilities in the Earth Sciences

The past several decades have seen an explosion in the availability of state-of-the-art research facilities, facilities that have been specifically constructed and operated for use by the general scientific community. Earth scientists have recognized the power of these methods for frontier research and are taking advantage of them in increasing numbers. “User- friendliness” is the key that makes these shared instruments very effective components in our arsenal of collaborative and interdisciplinary research tools.

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The Link between Large Igneous Province Eruptions and Mass Extinctions

In the past 300 million years, there has been a near-perfect association between extinction events and the eruption of large igneous provinces, but proving the nature of the causal links is far from resolved. The asso- ciated environmental changes often include global warming and the develop- ment of widespread oxygen-poor conditions in the oceans. This implicates a role for volcanic CO2 emissions, but other perturbations of the global carbon cycle, such as release of methane from gas hydrate reservoirs or shut-down of photosynthesis in the oceans, are probably required to achieve severe green- house warming. The best links between extinction and eruption are seen in the interval from 300 to 150 Ma. With the exception of the Deccan Trap eruptions (65 Ma), the emplacement of younger volcanic provinces has been generally associated with significant environmental changes but little or no increase in extinction rates above background levels.

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December 2025 --The Variscan Orogeny in Europe – Understanding Supercontinent Formation

The Variscan orogen formed between 380 and 300 million years ago through several accretionary and collisional cycles, culminating with the construction of the Pangea supercontinent. This process occurred via sequential opening and closure of oceanic basins, synchronous detachment of Gondwana derived continental ribbons, and their outboard amalgamation onto the Laurussia margin. The Variscan orogen is rather unique compared with other orogenic belts on Earth: its overthickened and dominantly magmatic crust in the central belt, surprisingly minor mantle involvement in the magmatic and geodynamic processes, coherent and pulsed magmatism along the collision suture, and its complex accretionary history. Because its final product, Pangea, is the youngest and best-understood supercontinent on Earth, the Variscan orogeny offers clues for understanding the mechanisms of supercontinent formation.